Change modules for genobioinfo usability

bin/DTM/make_bedgraph.sh

@@ -21,10 +21,8 @@ I_NAMES=$2	# path to chrom_names file
 R_PATTERN=$3	# chr pattern to remove from bedgraph file
 
 #### MODULES ####
-module load bioinfo/samtools-1.16.1
-module load bioinfo/bedtools-2.27.1
-
-
+module load bioinfo/samtools/1.18
+module load bioinfo/bedtools/2.27.1
 
 replace_chr_names() {
 	# replace chr names
@@ -82,7 +80,7 @@ remove_unwanted_scaffold(){
 
 
 main() {
-	BAM=$(find $I_DIR -type f -name '*R1*unmerged.bam' -execdir basename '{}' ';'|sed -n ${SLURM_ARRAY_TASK_ID}p)
+	BAM=$(find $I_DIR -type f -name '*unmerged.bam' -execdir basename '{}' ';'|sed -n ${SLURM_ARRAY_TASK_ID}p)
 	echo -e "Traitement de ${BAM}"
 	BAM_PATH="${I_DIR}/${BAM}"
 
@@ -97,4 +95,4 @@ main() {
 	remove_unwanted_scaffold
 }
 
-main
\ No newline at end of file
+main